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☰ Find Share About News Account Login Register Search Responsible use of MIMIC data with online services like GPT Network issues at MIT, impacting the availability of Guidelines for creating datasets and models from MIMIC The Research Resource for Complex Physiologic Signals Data Software Challenges Tutorials Featured Resources Software Open Access Software for computing Heart Rate Fragmentation Madalena Costa Heart rate fragmentation: a new method for the analysis of cardiac interbeat interval time series. The code provided can be run in Windows, Mac and Linux machines. heart rate variability aging cardiovascular disease vagal tone time series analysis prediction of atrial fibrillation cardiac autonomic function prediction of cardiovascular events prediction of cognitive decline heart rate fragmentation Published: Feb. 14, 2024. Version: 1.0.0 Challenge Credentialed Access SNOMED CT Entity Linking Challenge Will Hardman, Mark Banks, Rory Davidson, Donna Truran, Nindya Widita Ayuningtyas, Hoa Ngo, Alistair Johnson, Tom Pollard 272 discharge notes from the MIMIC-IV-Note dataset annotated with SNOMED CT concepts. snomed entity linking clinical annotation Published: Dec. 19, 2023. Version: 1.0.0 Database Open Access VitalDB, a high-fidelity multi-parameter vital signs database in surgical patients Hyung-Chul Lee, Chul-Woo Jung VitalDB, a high-fidelity multi-parameter vital signs database in surgical patients waveform anesthesia vitaldb intraoperative biosignal ecg Published: Sept. 21, 2022. Version: 1.0.0 Database Credentialed Access MIMIC-IV Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark Large database of de-identified health information from patients admitted to Beth Israel Deaconess Medical Center mimic critical care machine learning intensive care unit Published: Jan. 6, 2023. Version: 2.2 Database Credentialed Access MIMIC-CXR Database Alistair Johnson, Tom Pollard, Roger Mark, Seth Berkowitz, Steven Horng Chest radiographs in DICOM format with associated free-text reports. mimic computer vision machine learning chest x-rays radiology natural language processing Published: Sept. 19, 2019. Version: 2.0.0 Database Credentialed Access BRAX, a Brazilian labeled chest X-ray dataset Eduardo Pontes Reis, Joselisa Paiva, Maria Carolina Bueno da Silva, Guilherme Alberto Sousa Ribeiro, Victor Fornasiero Paiva, Lucas Bulgarelli, Henrique Lee, Paulo Victor dos Santos, vanessa brito, Lucas Amaral, Gabriel Beraldo, Jorge Nebhan Haidar Filho, Gustavo Teles, Gilberto Szarf, Tom Pollard, Alistair Johnson, Leo Anthony Celi, Edson Amaro BRAX contains 24,959 chest radiography exams and 40,967 images acquired in a large general Brazilian hospital. All images have been read by trained radiologists and 14 labels were derived from Brazilian Portuguese reports using NLP. chest x-ray dataset artificial intelligence Published: June 17, 2022. Version: 1.1.0 Latest Resources Database Restricted Access DREAMT: Dataset for Real-time sleep stage EstimAtion using Multisensor wearable Technology Ke Wang, Jiamu Yang, Ayush Shetty, Jessilyn Dunn Dataset for Real-time sleep stage EstimAtion using Multisensor wearable Technology wearable biomedical sleep disorders time series classification Published: April 30, 2024. Version: 1.0.0 Database Credentialed Access Medical Expert Annotations of Unsupported Facts in Doctor-Written and LLM-Generated Patient Summaries Stefan Hegselmann, Shannon Shen, Florian Gierse, Monica Agrawal, David Sontag, Xiaoyi Jiang Annotations for unsupported facts in 100 original MIMIC patient summaries (discharge instructions) and hallucinations in 100 Large Language Model (LLM) generated patient summaries labeled by two medical experts. Published: April 28, 2024. Version: 1.0.0 Database Contributor Review CARMEN-I: A resource of anonymized electronic health records in Spanish and Catalan for training and testing NLP tools Eulalia Farre Maduell, Salvador Lima-Lopez, Santiago Andres Frid, Artur Conesa, Elisa Asensio, Antonio Lopez-Rueda, Helena Arino, Elena Calvo, Maria Jesús Bertran, Maria Angeles Marcos, Montserrat Nofre Maiz, Laura Tañá Velasco, Antonia Marti, Ricardo Farreres, Xavier Pastor, Xavier Borrat Frigola, Martin Krallinger CARMEN-I is a Spanish corpus of 2,000 clinical records from Hospital Clínic, Barcelona. It covers COVID-19 patients and comorbidities, serving as a resource for training clinical NLP models and researchers in NLP applied to clinical documents. de-identification clinical ner anonymization Published: April 20, 2024. Version: 1.0.1 Challenge Credentialed Access Discharge Me: BioNLP ACL’24 Shared Task on Streamlining Discharge Documentation Justin Xu Data for the "Discharge Me!" Shared Task on Streamlining Discharge Documentation for BioNLP ACL’24 generation bionlp acl discharge summary Published: April 12, 2024. Version: 1.3 Database Credentialed Access EHRNoteQA: A Patient-Specific Question Answering Benchmark for Evaluating Large Language Models in Clinical Settings Sunjun Kweon, Jiyoun Kim, Heeyoung Kwak, Dongchul Cha, Hangyul Yoon, Kwang Hyun Kim, Seunghyun Won, Edward Choi A patient-specific question answering benchmark tailored for evaluating Large Language Models (LLMs) in clinical environments Published: April 3, 2024. Version: 1.0.0 Database Credentialed Access RaDialog Instruct Dataset Chantal Pellegrini, Ege Özsoy, Benjamin Busam, Nassir Navab, Matthias Keicher Image-based instruct data for Chest X-Ray understanding and analysis. radiology report generation large vision-language models medical image understaning radiology assistant radiology chatbot Published: March 25, 2024. Version: 1.0.0 More resources News Guidelines for creating datasets and models from MIMIC News from: MIMIC-IV v2.2. April 24, 2024 We recognize that there is value in creating datasets or models that are either derived from MIMIC or which augment MIMIC in some way (for example, by adding annotations). Here are some guidelines on creating these datasets and models: Any derived datasets or models should be treated as containing sensitive information . If you wish to share these resources, they should be shared on under the same agreement as the source data. If you would like to use the MIMIC acronym in your project name , please include the letters Ext” (for example, MIMIC-IV-Ext-YOUR-DATASET"). Ext may either indicate extracted” (e.g. a derived subset) or extended” (e.g. annotations), depending on your use case. Read more: https://mimic.mit.edu/docs/community/derived/ Network issues at MIT, impacting the availability of April 9, 2024 We are currently experiencing network issues at MIT, impacting the availability of services. We apologize for any inconvenience this may cause and are working to resolve the issue as soon as we can. George B. Moody Challenge 2024: Challenge Update March 14, 2024 We are delighted to announce that the George B. Moody Challenges are partnering with Data Science Africa (DSA) and the IEEE Signal Processing Society’s Challenges and Data Collections Committee (CDCC). The IEEE CDCC is supporting this year’s Challenge with additional cash prizes for participating teams from Africa and the Challenge organizers will be running a workshop at this year’s annual DSA meeting in Kenya . In connection with this, the Challenge organizers will be running a workshop at DSA in Kenya from June 2-5th 2024. Please note that we are also accepting (and scoring) entries, and there are two deadlines coming up - April 8th to submit a preliminary entry to the Challenge and April 15th to submit a (placeholder) abstract to CinC . Read more: https://physionet.org/news/post/challenge-2024 Duke Critical Care Datathon: 13-14 April 2024 Feb. 7, 2024 Our colleagues at Duke are hosting a Critical Care Datathon on April 13-14, 2024. T he Datathon is a collaborative two-day event that connects critical care clinicians with data scientists to develop pragmatic data-driven models using de-identified critical care...